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Species belonging to selected taxon:

Bos taurus



ABOUT THIS RECORD

ID: MNEST033146
species: Bos taurus
miRNA family: mir-23
source: miRBase, original name: bta-mir-23b (MI0005066)

Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATCACATTGCCAGGGATTACCAC

miRNA*
GGGTTCCTGGCATGCTGATTT

mismatches: 2
bulges: 4

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pre-miRNA
GGGTTCCTGGCATGCTGATTTGTGACTTAAGATTAAAATCACATTGCCAGGGATTACCAC

dot-bracket secondary structure
((((((((((((((.((((((..............)))))))).))))))))))..))..


SIMILARITIES
miRBase eca-mir-23b: 2e-28

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-23: 2e-22

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa

references

[1] Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ, PLoS One. 4:e6349(2009)., "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection"
[2] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
[3] Gu Z, Eleswarapu S, Jiang H, FEBS Lett. 581:981-988(2007)., "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland"




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